Page Index - lindenb/jvarkit GitHub Wiki

457 page(s) in this GitHub Wiki:

• Home
• AddLinearIndexToBed
• Please reload this page
• AlleleFrequencyCalculator
• Please reload this page
• AlmostSortedVcf
• Please reload this page
• BackLocate
• Please reload this page
• Bam2Raster
• Please reload this page
• Bam2SVG
• Please reload this page
• Bam2Wig
• Please reload this page
• BamCmpCoverage
• Please reload this page
• BamGenScan
• Please reload this page
• BamIndexReadNames
• Please reload this page
• BamLiftOver
• Please reload this page
• BamQueryReadNames
• Please reload this page
• BamRenameChromosomes
• Please reload this page
• BamStats01
• Please reload this page
• BamStats02
• Please reload this page
• BamStats02View
• Please reload this page
• BamStats04
• Please reload this page
• BamStats05
• Please reload this page
• BamTile
• Please reload this page
• BamToFastq
• Please reload this page
• BamToSql
• Please reload this page
• BamTreePack
• Please reload this page
• BatchIGVPictures
• Please reload this page
• BedIndexTabix
• Please reload this page
• BedRenameChromosomes
• Please reload this page
• BimToVcf
• Please reload this page
• BioAlcidae
• Please reload this page
• Biostar103303
• Please reload this page
• Biostar105754
• Please reload this page
• Biostar130456
• Please reload this page
• Biostar139647
• Please reload this page
• Biostar145820
• Please reload this page
• Biostar154220
• Please reload this page
• Biostar160470
• Please reload this page
• Biostar165777
• Please reload this page
• Biostar170742
• Please reload this page
• Biostar172515
• Please reload this page
• Biostar173114
• Please reload this page
• Biostar175929
• Please reload this page
• Biostar178713
• Please reload this page
• Biostar214299
• Please reload this page
• Biostar234081
• Please reload this page
• Biostar234230
• Please reload this page
• Biostar3654
• Please reload this page
• Biostar59647
• Please reload this page
• Biostar76892
• Please reload this page
• Biostar77288
• Please reload this page
• Biostar77828
• Please reload this page
• Biostar78285
• Please reload this page
• Biostar78400
• Please reload this page
• Biostar81455
• Please reload this page
• Biostar84452
• Please reload this page
• Biostar84786
• Please reload this page
• Biostar86363
• Please reload this page
• Biostar86480
• Please reload this page
• Biostar90204
• Please reload this page
• Biostar92368
• Please reload this page
• Biostar94573
• Please reload this page
• Biostar95652
• Please reload this page
• Blast2Sam
• Please reload this page
• BlastFilterJS
• Please reload this page
• BlastMapAnnots
• Please reload this page
• BlastNToSnp
• Please reload this page
• BlastnToSnp
• Please reload this page
• BlastToSam
• Please reload this page
• BuildWikipediaOntology
• Please reload this page
• BWAMemNOp
• Please reload this page
• Citing
• Please reload this page
• CmpBamAndBuild
• Please reload this page
• CmpBams
• Please reload this page
• CompareBams2
• Please reload this page
• CompareBams4
• Please reload this page
• Compilation
• Please reload this page
• ConcatSam
• Please reload this page
• DownSampleVcf
• Please reload this page
• EVS2Bed
• Please reload this page
• Evs2Xml
• Please reload this page
• ExtendReferenceWithReads
• Please reload this page
• FastqEntropy
• Please reload this page
• FastqGrep
• Please reload this page
• FastqJS
• Please reload this page
• FastqRecordTreePack
• Please reload this page
• FastqRevComp
• Please reload this page
• FastqShuffle
• Please reload this page
• FastqSplitInterleaved
• Please reload this page
• Fastqtofasta
• Please reload this page
• FindAllCoverageAtPosition
• Please reload this page
• FindAVariation
• Please reload this page
• FindCorruptedFiles
• Please reload this page
• FindMyVirus
• Please reload this page
• FindNewSpliceSites
• Please reload this page
• FixVCF
• Please reload this page
• FixVcfFormat
• Please reload this page
• FixVcfMissingGenotypes
• Please reload this page
• ForkVcf
• Please reload this page
• GalaxyIntegrationNotebook
• Please reload this page
• GATKCodeGenerator
• Please reload this page
• GBrowserHtml
• Please reload this page
• GCAndDepth
• Please reload this page
• GenomicJaspar
• Please reload this page
• Gff2KnownGene
• Please reload this page
• GroupByGene
• Please reload this page
• Gtf2Xml
• Please reload this page
• HaloplexParasite
• Please reload this page
• HowManyBamDict
• Please reload this page
• Illuminadir
• Please reload this page
• IlluminaDirectory
• Please reload this page
• Illuminafastqstats
• Please reload this page
• KnownGenesToBed
• Please reload this page
• LiftOverToSVG
• Please reload this page
• MapUniProtFeatures
• Please reload this page
• MergeBlastXml
• Please reload this page
• MergeSplittedBlast
• Please reload this page
• MiniCaller
• Please reload this page
• MsaToVcf
• Please reload this page
• NcbiTaxonomyToXml
• Please reload this page
• NgsFilesScanner
• Please reload this page
• NgsFilesSummary
• Please reload this page
• NoZeroVariationVCF
• Please reload this page
• PadEmptyFastq
• Please reload this page
• PcrClipReads
• Please reload this page
• PcrSliceReads
• Please reload this page
• PicardMetricsToXML
• Please reload this page
• PubmedDump
• Please reload this page
• PubmedFilterJS
• Please reload this page
• PubmedGender
• Please reload this page
• PubmedMap
• Please reload this page
• PubmedOrcidGraph
• Please reload this page
• ReduceBlast
• Please reload this page
• ReferenceToVCF
• Please reload this page
• Sam2Tsv
• Please reload this page
• SAM4WebLogo
• Please reload this page
• SamClipIndelFraction
• Please reload this page
• SamExtractClip
• Please reload this page
• SamFixCigar
• Please reload this page
• SamGrep
• Please reload this page
• SamJmx
• Please reload this page
• SamJS
• Please reload this page
• SamMaskAlignedBases
• Please reload this page
• SamReadLengthDistribution
• Please reload this page
• SamRetrieveSeqAndQual
• Please reload this page
• SamSlop
• Please reload this page
• SamToJson
• Please reload this page
• SamToPsl
• Please reload this page
• SigFrame
• Please reload this page
• SkipXmlElements
• Please reload this page
• SortSamRefName
• Please reload this page
• SortVCFOnInfo
• Please reload this page
• SortVCFOnRef
• Please reload this page
• SortVCFOnRef2
• Please reload this page
• SortVcfOnRef2
• Please reload this page
• SplitBam
• Please reload this page
• SplitBam3
• Please reload this page
• SplitVcf
• Please reload this page
• UniprotFilterJS
• Please reload this page
• VCF2SQL
• Please reload this page
• VCF2XML
• Please reload this page
• VCFAnnoBam
• Please reload this page
• VCFBed
• Please reload this page
• VCFBedSetFilter
• Please reload this page
• VCFBigWig
• Please reload this page
• VcfBiomart
• Please reload this page
• VcfBurdenFilterExac
• Please reload this page
• VcfBurdenFilterGenes
• Please reload this page
• VcfBurdenFisherH
• Please reload this page
• VcfBurdenFisherV
• Please reload this page
• VcfBurdenMAF
• Please reload this page
• VcfBurdenRscriptV
• Please reload this page
• VcfBurdenSplitter
• Please reload this page
• VcfCadd
• Please reload this page
• VCFCombineTwoSnvs
• Please reload this page
• VCFComm
• Please reload this page
• VcfCompare
• Please reload this page
• VcfCompareCallers
• Please reload this page
• VcfCompareCallersOneSample
• Please reload this page
• Vcfcomparegt
• Please reload this page
• VCFComparePredictions
• Please reload this page
• VcfConcat
• Please reload this page
• VcfCutSamples
• Please reload this page
• VcfDerby01
• Please reload this page
• VcfDoest
• Please reload this page
• VcfEigen01
• Please reload this page
• VcfEnsemblReg
• Please reload this page
• VcfEnsemblVepRest
• Please reload this page
• VCFFilterJS
• Please reload this page
• VcfFilterNotInPedigree
• Please reload this page
• VcffilterSequenceOntology
• Please reload this page
• VCFFixIndels
• Please reload this page
• VCFGeneOntology
• Please reload this page
• VcfGeneSplitter
• Please reload this page
• VcfGetVariantByIndex
• Please reload this page
• VcfHead
• Please reload this page
• VcfIn
• Please reload this page
• VcfIndexTabix
• Please reload this page
• VcfInjectPedigree
• Please reload this page
• VcfJaspar
• Please reload this page
• VcfJmx
• Please reload this page
• Vcfliftover
• Please reload this page
• VCFMerge
• Please reload this page
• VcfMoveFiltersToInfo
• Please reload this page
• VcfMultiToOne
• Please reload this page
• VcfMultiToOneAllele
• Please reload this page
• VcfPeekVcf
• Please reload this page
• VCFPolyX
• Please reload this page
• VCFPredictions
• Please reload this page
• VcfRebase
• Please reload this page
• VcfRegistryWeb
• Please reload this page
• VcfRegulomeDB
• Please reload this page
• VcfRemoveGenotypeIfInVcf
• Please reload this page
• VcfRemoveGenotypeJs
• Please reload this page
• VcfRenameChromosomes
• Please reload this page
• VCFReplaceTag
• Please reload this page
• VcfSampleRename
• Please reload this page
• VCFShuffle
• Please reload this page
• VcfStats
• Please reload this page
• VCFStripAnnotations
• Please reload this page
• VCFTabixml
• Please reload this page
• VcfTail
• Please reload this page
• VcfToBam
• Please reload this page
• VcfToHilbert
• Please reload this page
• VcfToRdf
• Please reload this page
• VcfToSvg
• Please reload this page
• VcfToZip
• Please reload this page
• VcfTreePack
• Please reload this page
• VCFTrio
• Please reload this page
• VcfVcf
• Please reload this page
• WorldMapGenome
• Please reload this page
• XContaminations
• Please reload this page