Page Index - lindenb/jvarkit GitHub Wiki
229 page(s) in this GitHub Wiki:
- Home
- AddLinearIndexToBed
- AlleleFrequencyCalculator
- AlmostSortedVcf
- BackLocate
- Bam2Raster
- Bam2SVG
- Bam2Wig
- BamCmpCoverage
- BamGenScan
- BamIndexReadNames
- BamLiftOver
- BamQueryReadNames
- BamRenameChromosomes
- BamStats01
- BamStats02
- BamStats02View
- BamStats04
- BamStats05
- BamTile
- BamToFastq
- BamToSql
- BamTreePack
- BatchIGVPictures
- BedIndexTabix
- BedRenameChromosomes
- BimToVcf
- BioAlcidae
- Biostar103303
- Biostar105754
- Biostar130456
- Biostar139647
- Biostar145820
- Biostar154220
- Biostar160470
- Biostar165777
- Biostar170742
- Biostar172515
- Biostar173114
- Biostar175929
- Biostar178713
- Biostar214299
- Biostar234081
- Biostar234230
- Biostar3654
- Biostar59647
- Biostar76892
- Biostar77288
- Biostar77828
- Biostar78285
- Biostar78400
- Biostar81455
- Biostar84452
- Biostar84786
- Biostar86363
- Biostar86480
- Biostar90204
- Biostar92368
- Biostar94573
- Biostar95652
- Blast2Sam
- BlastFilterJS
- BlastMapAnnots
- BlastNToSnp
- BlastnToSnp
- BlastToSam
- BuildWikipediaOntology
- BWAMemNOp
- Citing
- CmpBamAndBuild
- CmpBams
- CompareBams2
- CompareBams4
- Compilation
- ConcatSam
- DownSampleVcf
- EVS2Bed
- Evs2Xml
- ExtendReferenceWithReads
- FastqEntropy
- FastqGrep
- FastqJS
- FastqRecordTreePack
- FastqRevComp
- FastqShuffle
- FastqSplitInterleaved
- Fastqtofasta
- FindAllCoverageAtPosition
- FindAVariation
- FindCorruptedFiles
- FindMyVirus
- FindNewSpliceSites
- FixVCF
- FixVcfFormat
- FixVcfMissingGenotypes
- ForkVcf
- GalaxyIntegrationNotebook
- GATKCodeGenerator
- GBrowserHtml
- GCAndDepth
- GenomicJaspar
- Gff2KnownGene
- GroupByGene
- Gtf2Xml
- HaloplexParasite
- HowManyBamDict
- Illuminadir
- IlluminaDirectory
- Illuminafastqstats
- KnownGenesToBed
- LiftOverToSVG
- MapUniProtFeatures
- MergeBlastXml
- MergeSplittedBlast
- MiniCaller
- MsaToVcf
- NcbiTaxonomyToXml
- NgsFilesScanner
- NgsFilesSummary
- NoZeroVariationVCF
- PadEmptyFastq
- PcrClipReads
- PcrSliceReads
- PicardMetricsToXML
- PubmedDump
- PubmedFilterJS
- PubmedGender
- PubmedMap
- PubmedOrcidGraph
- ReduceBlast
- ReferenceToVCF
- Sam2Tsv
- SAM4WebLogo
- SamClipIndelFraction
- SamExtractClip
- SamFixCigar
- SamGrep
- SamJmx
- SamJS
- SamMaskAlignedBases
- SamReadLengthDistribution
- SamRetrieveSeqAndQual
- SamSlop
- SamToJson
- SamToPsl
- SigFrame
- SkipXmlElements
- SortSamRefName
- SortVCFOnInfo
- SortVCFOnRef
- SortVCFOnRef2
- SortVcfOnRef2
- SplitBam
- SplitBam3
- SplitVcf
- UniprotFilterJS
- VCF2SQL
- VCF2XML
- VCFAnnoBam
- VCFBed
- VCFBedSetFilter
- VCFBigWig
- VcfBiomart
- VcfBurdenFilterExac
- VcfBurdenFilterGenes
- VcfBurdenFisherH
- VcfBurdenFisherV
- VcfBurdenMAF
- VcfBurdenRscriptV
- VcfBurdenSplitter
- VcfCadd
- VCFCombineTwoSnvs
- VCFComm
- VcfCompare
- VcfCompareCallers
- VcfCompareCallersOneSample
- Vcfcomparegt
- VCFComparePredictions
- VcfConcat
- VcfCutSamples
- VcfDerby01
- VcfDoest
- VcfEigen01
- VcfEnsemblReg
- VcfEnsemblVepRest
- VCFFilterJS
- VcfFilterNotInPedigree
- VcffilterSequenceOntology
- VCFFixIndels
- VCFGeneOntology
- VcfGeneSplitter
- VcfGetVariantByIndex
- VcfHead
- VcfIn
- VcfIndexTabix
- VcfInjectPedigree
- VcfJaspar
- VcfJmx
- Vcfliftover
- VCFMerge
- VcfMoveFiltersToInfo
- VcfMultiToOne
- VcfMultiToOneAllele
- VcfPeekVcf
- VCFPolyX
- VCFPredictions
- VcfRebase
- VcfRegistryWeb
- VcfRegulomeDB
- VcfRemoveGenotypeIfInVcf
- VcfRemoveGenotypeJs
- VcfRenameChromosomes
- VCFReplaceTag
- VcfSampleRename
- VCFShuffle
- VcfStats
- VCFStripAnnotations
- VCFTabixml
- VcfTail
- VcfToBam
- VcfToHilbert
- VcfToRdf
- VcfToSvg
- VcfToZip
- VcfTreePack
- VCFTrio
- VcfVcf
- WorldMapGenome
- XContaminations