Page Index - lian0090/SKAT2 GitHub Wiki

12 page(s) in this GitHub Wiki:

• Home
• Functions implemented in the package
• Basic call of the GWAS function
• Examples
• data preparation
• Example 1: GWAS by SKAT/Score: no random component in the NULL model.
• Test markers as fixed effects with P3D method (population structure previously determined)
• Step 1, fit the NULL model to get the population parameters
• Installation
• Possible Problems during installation
• OS X Mavericks
• getLoglik: get log likelihood from an input variance