Page Index - jtamames/SqueezeMeta GitHub Wiki

15 page(s) in this GitHub Wiki:

• Home
• Welcome to the SqueezeMeta wiki!
• SqueezeMeta internals
• Use cases
• Downstream analysis of SqueezeMeta results
• A discussion on taxonomic annotation and the meaning of disparity values of contigs
• Combining metagenomes and metatranscriptomes with SqueezeMeta
• Loading SQM results into anvi'o
• Looking (exhaustively) for a particular function
• Some papers using SqueezeMeta (non comprehensive list)
• Upcoming to 1.6
• Using R to analyze your SQM results
• Using SQMtools (pre 1.6.2) in a Windows environment
• When to use each of the SqueezeMeta modes
• Working with long reads (ONT, PacBio)