Page Index - jeanollion/bacmman GitHub Wiki
70 page(s) in this GitHub Wiki:
- Home
- BACMMAN: BACteria in Mother Machine Analyzer
- Which data can be processed by BACMMAN ?
- Mother Machine data
- Fluorescence Images
- Phase-contrast images
- Other microscopy data
- Features
- Automatic pre-processing
- Automatic Segmentation and tracking
- Manual Editing
- Output data
- Interplay between statistical analysis and image visualization
- Versatility
- Command line mode (headless mode)
- Compatibility
- Terms and Conditions
- Acknowledgments
- Change Log
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- Data Analysis
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- Data Analysis with Python
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- Data Curation
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- Deep Learning Fluorescence Denoising
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- Developer Documentation
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- DistNet
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- DiSTNet2D
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- Edit and manage configuration with Github
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- Example Datasets
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- Example of implementation of a measurement module
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- FAQ
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- FineTune DistNet
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- Headless Mode
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- How to Adapt Configuration
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- Image Import
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- Install CUDA 11.2
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- Installation
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- Omero
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- Online Configuration Library
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- Online DL Model Library
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- Optimization
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- Selections
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- Train and use PixMClass
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- Training DiSTNet2D
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- Visualization
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