Page Index - iqbal-lab-org/viridian GitHub Wiki

30 page(s) in this GitHub Wiki:

• Home
• Viridian
• Installation
• Hardware requirements
• OS requirements
• Installation
• Docker
• Singularity
• From source
• Test run
• Basic Usage
• Using reads files as input
• Download reads and then run Viridian
• Output files
• Command line options
• Input reads
• Basic options
• Decontamination
• Amplicon scheme options
• Assembly, QC and masking options
• Amplicon schemes
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• Citing Viridian
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• JSON output file
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• Plots
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• QC TSV output file
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