Page Index - hillerlab/TOGA2 GitHub Wiki

62 page(s) in this GitHub Wiki:

• Home
• TOGA2
• How to use this Wiki
• Contents
• alignment
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• Automated input generation with "prepare‐input" mode
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• Chain artefact resolution
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• classification
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• Computing CDS integrity statistics
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• Exon annotation
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• feature_extraction
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• gene_inference
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• Glossary
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• Inactivating mutations
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• Input files
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• Installation
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• Logging & troubleshooting
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• logs
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• Loss status classification
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• meta
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• nextflow
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• Output structure
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• Parallel execution
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• preprocessing
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• Query projection & gene notation
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• Rejection reasons
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• SpliceAI prediction generation with “spliceai" mode
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• SpliceAI‐aware TOGA2
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• tmp
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• toga2orthogroups
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• Top level files
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• ucsc_browser_files
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• Using SpliceAI predictions with TOGA2
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