Page Index - g-e-kenney/prettyClusters GitHub Wiki
37 page(s) in this GitHub Wiki:
- Home
- Why prettyClusters?
- The prettyClusters toolset
- The core toolset
- Accessory components
- Workflows for prettyClusters
- Preparing for use of prettyClusters
- Basic workflow
- Incorporation of data from other sources (EMBL, GenBank, private data)
- A standard prettyClusters run
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- Function: analyzeNeighbors
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- Function: gbToIMG
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- Function: generateNeighbors
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- Function: identifySubgroups
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- Function: incorpIprScan
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- Function: prepNeighbors
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- Function: prettyClusterDiagrams
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- Function: repnodeTrim
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- Function: trimFasta
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- Installation guide
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- Preparing data from non IMG sources for prettyClusters
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- Running prettyClusters with GenBank files
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- Troubleshooting common issues
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