Page Index - g-e-kenney/prettyClusters GitHub Wiki

37 page(s) in this GitHub Wiki:

• Home
• Why prettyClusters?
• The prettyClusters toolset
• The core toolset
• Accessory components
• Workflows for prettyClusters
• Preparing for use of prettyClusters
• Basic workflow
• Incorporation of data from other sources (EMBL, GenBank, private data)
• A standard prettyClusters run
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• Function: analyzeNeighbors
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• Function: gbToIMG
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• Function: generateNeighbors
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• Function: identifySubgroups
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• Function: incorpIprScan
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• Function: prepNeighbors
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• Function: prettyClusterDiagrams
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• Function: repnodeTrim
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• Function: trimFasta
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• Installation guide
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• Preparing data from non IMG sources for prettyClusters
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• Running prettyClusters with GenBank files
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• Troubleshooting common issues
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