Page Index - ampinzonv/BB3 GitHub Wiki

67 page(s) in this GitHub Wiki:

• Home
• Why BioBash?
• A matter of consistency and efficiency
• BioBASH is not really a new kid on the block
• Coding standards
• Side note
• Cool stuff helped BioBash development
• bb_blast_best_hit
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• bb_blast_on_the_fly
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• bb_blast_summary
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• bb_create_blast_db
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• bb_fasta_stats
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• bb_fastq_stats
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• bb_fastq_subsampling
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• bb_fastq_to_fasta
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• bb_get_fasta_entry
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• bb_get_fasta_header
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• bb_get_fasta_id
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• bb_get_fasta_length
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• bb_get_fasta_range
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• bb_get_fasta_seq
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• bb_get_list
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• bb_guess_db_type
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• bb_plot_blast_hits_txt
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• bb_plot_histogram_txt
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• bb_plot_quality_distribution
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• bb_plot_quality_per_base
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• bb_project_setup
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• bb_reciprocal_blast
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• bb_run_blast
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• bb_split_multiple_fasta
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• BioBash Tutorial
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• Important notes on blast functions
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• Installing Biobash
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• Overview
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• troubleshooting
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• Uninstalling BioBash
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