Page Index - alyrcoun/EPP622-2026-SNPCalling GitHub Wiki
15 page(s) in this GitHub Wiki:
- Home
- Step 1 Quality Control (FastQC & MultiQC)
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- Step 2 Read Trimming and Filtering (fastp)
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- Step 3 Alignment (bwa‐mem2 samtools)
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- Step 4 Variant Calling & Filtering (bcftools mpileup call)
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- Step 5 Filtering (bcftools filter)
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- Step 6 Evaluation Against the Truth Set
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- Step 7 ‐ Assignment Analysis
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