Page Index - USDA-ARS-GBRU/Pepper_TrioBinning GitHub Wiki
14 page(s) in this GitHub Wiki:
- Home
- Welcome to the Pepper Trio-binning wiki
- Data
- Genome Assembly
- Scaffolding
- Assembly quality metrics
- 1. Parental short read sequence data processing
- 2. Clean HiFi reads
- 3. Assembly with hifiasm
- 4. Assembly with TrioCanu
- 5. Homology based scaffolding workflow
- Assembly of Canu binned HiFi reads with hifiasm
- Calculate Assembly Statistics
- Calculate LAI