Page Index - ULJ-Yale/qunex GitHub Wiki

140 page(s) in this GitHub Wiki:

• Home
• QuNex documentation
• Background
• Registration
• Forum and issue reporting
• QuNex quick start
• General overview
• User guides
• Executing QuNex commands
• Onboarding data into QuNex
• Preparing mapping and batch files
• Running HCP pipelines and performing QC
• BOLD preprocessing & analyses
• Data visualization & output mapping
• Non human primate (NHP) pipelines
• QuNex deployment in XNAT
• Overview
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• Overview FileBatch
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• Overview FileConc
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• Overview FileFidl
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• Overview FileFormats
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• Overview FileList
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• Overview FileMapping
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• Overview FileROI
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• Overview FileSession
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• Overview FileSessionPipeline
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• Overview FilesFoldersOrganization
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• Overview GeneralUse
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• Overview Logging
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• Overview QuickStart
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• Overview QuNexContainer
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• Overview VisualSchematic
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• UsageDocs
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• UsageDocs BOLDFunctionalConnectivity
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• UsageDocs BOLDPreprocessing
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• UsageDocs BOLDTaskActivation
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• UsageDocs CIFTIVisualizationTemplate
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• UsageDocs CustomBOLDRegressors
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• UsageDocs DICOMDeidentification
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• UsageDocs GeneratingBatchFiles
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• UsageDocs GroupLevelStats
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• UsageDocs HCPDiffusion
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• UsageDocs HCPfMRISurface
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• UsageDocs HCPfMRIVolume
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• UsageDocs HCPFreeSurfer
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• UsageDocs HCPICAFix
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• UsageDocs HCPLongitudinalFreeSurfer
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• UsageDocs HCPMappingDocumentation
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• UsageDocs HCPMSMAll
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• UsageDocs HCPPostFreeSurfer
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• UsageDocs HCPPreFreeSurfer
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• UsageDocs HCPPreprocessGeneral
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• UsageDocs HCPPreprocessing
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• UsageDocs HCPTask
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• UsageDocs MappingDataInAndOutQuNex
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• UsageDocs MappingHCPtoQunex
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• UsageDocs MovementScrubbing
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• UsageDocs MultiModalQC
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• UsageDocs OnboardingBIDSData
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• UsageDocs OnboardingDICOMData
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• UsageDocs OnboardingHCPData
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• UsageDocs OnboardingNewData
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• UsageDocs PostMortemMacaque
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• UsageDocs PreparingDataHCP
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• UsageDocs ProcessingParameters
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• UsageDocs QualityAssurance
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• UsageDocs QuNex extensions
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• UsageDocs ROIanalyses
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• UsageDocs Running Containerized QuNex with qunex_container
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• UsageDocs RunningHCPASL
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• UsageDocs RunningHCPtICA
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• UsageDocs RunningMultipleSessions
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• UsageDocs RunningPreprocessHCP
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• UsageDocs RunningQuNexRecipes
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• UsageDocs Scheduling
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• XNAT
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• XNAT Container_launch
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• XNAT Management
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