Page Index - TrinityCTAT/ctat-mutations GitHub Wiki

33 page(s) in this GitHub Wiki:

• Home
• Overview
• Installing CTAT-Mutations
• Running the CTAT-Mutations Pipeline
• Example
• Variant filtering and boosting methods
• Variant calling with IsoSeq Long Reads
• Output
• Variant Reports
• Variant Visualization
• Scalable/Secure Cloud Computing on Terra
• User support
• Literature Citations
• Notable uses of CTAT-Mutations or Benchmarking
• Funding
• CTAT mutations installation
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• CTAT mutations visualization
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• ctat_mutations_docker_singularity
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• ctat_mutations_software_installation
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• Galaxy toolshed installation
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• Output files and formats
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• Performance Assessment
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• single cell variant calling
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• Walk through tutorial
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