Page Index - TGAC/knowledge_base GitHub Wiki

52 page(s) in this GitHub Wiki:

• Home
• Welcome to the knowledge_base wiki!
• (unlisted page)
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• 1. Introduction
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• 2. Accessing the HPC environment
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• 3. Storage, and navigating the HPC area
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• 4. Working in the HPC environment
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• 5. Software in the HPC environment
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• 6. External access for the HPC
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• 7. Data management
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• 8. Mounting HPC Storage
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• ARRAYS ‐ managing lots of jobs simply and efficiently
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• Custom Conda Environment on HPC Without Using Containers (Worked Example)
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• Customising your bash profile for ease and efficiency
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• GitHub repository for your code
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• How to access aspera onsite
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• Induction (home)
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• Intro to CLI (Command Line Interface)
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• Mamba
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• mv command ‐ ACL issue
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• Running Snakemake with SLURM (using profile)
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• Singularity installations
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• Software installations
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• Software Setup ‐ Using a Singularity Definition File
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• Using the ei‐gpu partition on the Earlham Institute computing cluster
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• Using the GPUs at EI
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• Workflow management system
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