Page Index - Persilian/WGCNA GitHub Wiki

19 page(s) in this GitHub Wiki:

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• How to get publicly available RNAseq data with the SRA toolkit
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• Quantify gene expression with RSEM
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• Visualize your WGCNA network in Cytoscape
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• WGCNA stage 1: Data input and preprocessing, sample clustering and soft threshold choice
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• WGCNA stage 2: Network construction
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• WGCNA stage 3: Adjacency matrix and gene connectivity
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• WGCNA stage 4: Module and gene treatment correlation
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• WGCNA stage 5: Module treatment correlation heatmap
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• WGCNA stage 6: Module edge and node files for Cytoscape input
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