Page Index - Pa-Tou/stoat GitHub Wiki

34 page(s) in this GitHub Wiki:

• Home
• Installation
• Preparing the graphs
• Subcommands
• Understanding the code
• Next?
• Code overview
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• Example run
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• Generating the VCF input for stoat vcf
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• Input graphs and indexes
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• Installation (Linux & MacOS)
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• PR Log
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• Snarl data file format
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• stoat BHcorrect
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• stoat change‐ref
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• stoat graph
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• stoat test
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• stoat vcf
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• Test output format
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• Using the GBWT in stoat
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