----> Start Here for a Metabarcoding Pipeline <----

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Table of contents

A

Alpha Diversity measurements and tests

B

Bioinformatics reading list

Beta Diversity

C

Compositionality and You

D

DADA2

DADA2

Big ITS DADA2 DATA

DADA2 ITS Miseq test run

DADA2 ITS Nextseq test run

Differential Abundance

Differential abundance

E

F

FUNGuild importing Data

FungalTraits importing Data

G

Genome Quebec

Getting data off Genome Quebec

H

The High Profile Computer

The High Profile Computer at UNBC

N

Network analysis

P

Phyloseq

Making a Phyloseq Object

Removing samples and taxa and saving your phyloseq object

PICRUSt2

PICRUSt2

Q

Qiime2

Qiime2

Exporting your data to QIIME2

phylo-RPCA in Qiime2

R

Relative Abundance Graphs

R

Importing data into R

T

W