Yeast genomic DNA extraction with LiOAc SDS - MetabolicEngineeringGroupCBMA/MetabolicEngineeringGroupCBMA.github.io GitHub Wiki
This protocol was adapted from Lõoke M, Kristjuhan K, Kristjuhan A. Extraction of genomic DNA from yeasts for PCR-based applications. Biotechniques 2011;50:325–8.. According to the authors, it allows amplifying up to 3500 bp PCR products from yeast genomic DNA. It appears to be a popular protocol since it has many publications referring to it. This protocol is one of the most cited in literature. This is an indication that it works well.
- Spin down 200 μL liquid yeast culture[^1].
- Suspend cells in 100 μL LiOAc (200 mM) containing 1% SDS.
proceed to point 2 below
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Pick one yeast colony from a plate.
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Suspend cells in 100 μL LiOAc (200 mM) with 1% SDS.
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Incubate for 15 min on a bath of recently boiled water. Original protocol states 5-15 min at 70°C.
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Add 300 μL 96–100% ethanol, then mix by brief vortexing.
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Spin down DNA and cell debris at 15,000×g or the max speed for 3 min.
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Remove supernatant by decanting or pipetting.
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Add 1 mL 70% ethanol. Vortex briefly.
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Spin at the maximum speed that the centrifuge allow for 30s.
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Remove ethanol by decanting or pipetting.
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Dissolve pellet in 100 μL TE, H2O or Elution buffer from a miniprep kit.
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Spin down cell debris for 15 s or more at maximum speed.
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Use 1 μL supernatant for PCR.
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Store the chromosomal DNA at -20°C if it is not to be used immediately.