Page Index - McGranahanLab/Guidebook GitHub Wiki
32 page(s) in this GitHub Wiki:
- Home
- Welcome to Nicholas McGranahan lab!
- Lab meetings & presentations:
- Getting access:
- Coding practices:
- Nextflow:
- Singularity:
- Genomics England (GEL):
- GWAS:
- EGA
- Alignment with GPUs and Parabricks on UCL cluster
- 001 Welcome!
- 002 Getting UCL email address
- 003 Getting Crick email address
- 004 Getting access to UCL cluster
- 005: Getting access to Genomics England (GEL)
- 006 Introduction to statistics & coding: helpful resources
- 007 Coding practices for clear, clean and understandable code
- 008 Standard project structure
- 009 GitHub tutorial
- 010: UCL cluster: a tutorial for beginners
- 011 Nextflow basics & project structure
- 012: Nextflow execution on UCL cluster
- 013: Using the TCGA data on the UCL cluster
- 014: Singularity, part 1: installation of Singularity on Mac OS
- 015: Singularity, part 2: anatomy of Singularity's recipe
- 016: Singularity, part 3: singularity on cloud
- 017: GWAS with PLINK
- 018: Book and use the UCL CI 1st floor meeting room
- EGA data upload
- GEL basics
- Transfer data between NEMO AND UCL cluster