Page Index - McGranahanLab/Guidebook GitHub Wiki
56 page(s) in this GitHub Wiki:
- Home
- Welcome to Nicholas McGranahan lab!
- Lab meetings & presentations:
- Getting access:
- Coding practices:
- Nextflow:
- Singularity:
- Genomics England (GEL):
- GWAS:
- EGA
- Alignment with GPUs and Parabricks on UCL cluster
- Using Python on UCL cluster
- 001 Welcome!
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- 002 Getting UCL email address
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- 003 Getting Crick email address
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- 004 Getting access to UCL cluster
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- 005: Getting access to Genomics England (GEL)
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- 006 Introduction to statistics & coding: helpful resources
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- 007 Coding practices for clear, clean and understandable code
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- 008 Standard project structure
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- 009 GitHub tutorial
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- 010: UCL cluster: a tutorial for beginners
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- 011 Nextflow basics & project structure
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- 012: Nextflow execution on UCL cluster
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- 013: Using the TCGA data on the UCL cluster
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- 014: Singularity, part 1: installation of Singularity on Mac OS
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- 015: Singularity, part 2: anatomy of Singularity's recipe
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- 016: Singularity, part 3: singularity on cloud
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- 017: GWAS with PLINK
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- 018: Book and use the UCL CI 1st floor meeting room
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- EGA data upload
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- GEL basics
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- Transfer data between NEMO AND UCL cluster
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- using Python on UCL cluster
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