Page Index - GenomicsDB/GenomicsDB GitHub Wiki

50 page(s) in this GitHub Wiki:

• Home
• Introduction
• Basic GenomicsDB terminology
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• Bug report
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• Cloud URI support in GenomicsDB
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• Combined VCF options
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• Common issues
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• Compiling GenomicsDB
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• cppcheck log
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• Create a TileDB workspace
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• Dealing with multiple GenomicsDB partitions
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• External Contributions
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• GenomicsDB setup in a multi node cluster
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• GenomicsDB utilities
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• Importing CSVs into GenomicsDB
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• Importing VCF data into GenomicsDB
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• Incremental import into GenomicsDB
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• Java interface for importing VCF and CSV files into GenomicsDB
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• MPI with GenomicsDB
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• Overlapping variant calls in a sample
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• plink plink2 support
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• plink support
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• Querying GenomicsDB
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• Reading VCF files directly from S3 or GCS or over http(s)
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• Try out Docker images
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• Useful external tools
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