Page Index - EpiModel/EpiModeling GitHub Wiki
57 page(s) in this GitHub Wiki:
- Home
- The Emory RSPH HPC
- Coding Tips
- Applied Modeling Workflow
- Admin Infos
- Applied Modeling Project Components and Interactions
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- Applied Modeling Project Structure
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- Assorted Tips and Tricks for Windows Users
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- Automating batch jobs with EpiModelHPC and slurmworkflow
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- Coding Good Practices and Some Tips
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- Copying a private branch to a public repository
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- Diagnostic of an EpiModel Module
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- EpiModelHIV ‐ code conventions
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- EpiModelHIV ‐ New Parameters and Attributes
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- Getting Started with EpiModelHIV
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- Making Formatted Tables
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- Miscellaneous HPC administration infos
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- Processing Scenarios Tibbles
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- Programatically Defining Scenarios
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- Recommended Settings for RStudio
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- Registering for and logging in to HPC
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- Running network models with checkpoints
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- Running R interactively with srun
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- Running R with a batch job with sbatch
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- Setting up your HPC environment
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- Spack Environments
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- Using git on command line to access Github respositories
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- Using R via Spack on the HPC
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- Using Reproducible R Environments with the
renv
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- Working with files on the HPC
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- Writing and Debugging EpiModel Code
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