Sortie 5 : stdout de picardtools sortsam - Dioufamad/SNPs_Calling GitHub Wiki

[Tue Jun 26 13:57:10 CEST 2018] picard.sam.SortSam INPUT=../test5_sview_pp_nodup/AX227_vsMSU7_bwamem_pp_nodup.bam OUTPUT=./AX227_vsMSU7_bwamem_pp_nodup_sorted_idxed.bam SORT_ORDER=coordinate VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true    VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
[Tue Jun 26 13:57:10 CEST 2018] Executing as [email protected] on Linux 3.10.0-693.11.6.el7.x86_64 amd64; OpenJDK 64-Bit Server VM 1.8.0_65-b17; Picard version: 2.5.0(2c370988aefe41f579920c8a6a678a201c5261c1_1466708365)
INFO	2018-06-26 13:57:39	SortSam	Finished reading inputs, merging and writing to output now.
[Tue Jun 26 13:58:42 CEST 2018] picard.sam.SortSam done. Elapsed time: 1,53 minutes.
Runtime.totalMemory()=2715287552
[adiouf@node19 test6_sortsam]$