Sortie 3 : sdtout de bwa index - Dioufamad/SNPs_Calling GitHub Wiki

[adiouf@node19 test4_1_bwaindex]$ ls
MSU7.fa
[adiouf@node19 test4_1_bwaindex]$ bwa index MSU7.fa 
[bwa_index] Pack FASTA... 3.28 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncCreate] textLength=750192570, availableWord=64786324
[BWTIncConstructFromPacked] 10 iterations done. 99581898 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 190960522 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 272174106 characters processed.
[BWTIncConstructFromPacked] 40 iterations done. 344352906 characters processed.
[BWTIncConstructFromPacked] 50 iterations done. 408501626 characters processed.
[BWTIncConstructFromPacked] 60 iterations done. 465513146 characters processed.
[BWTIncConstructFromPacked] 70 iterations done. 516181114 characters processed.
[BWTIncConstructFromPacked] 80 iterations done. 561210922 characters processed.
[BWTIncConstructFromPacked] 90 iterations done. 601229498 characters processed.
[BWTIncConstructFromPacked] 100 iterations done. 636794074 characters processed.
[BWTIncConstructFromPacked] 110 iterations done. 668399962 characters processed.
[BWTIncConstructFromPacked] 120 iterations done. 696487306 characters processed.
[BWTIncConstructFromPacked] 130 iterations done. 721447370 characters processed.
[BWTIncConstructFromPacked] 140 iterations done. 743627914 characters processed.
[bwt_gen] Finished constructing BWT in 144 iterations.
[bwa_index] 268.96 seconds elapse.
[bwa_index] Update BWT... 2.47 sec
[bwa_index] Pack forward-only FASTA... 2.04 sec
[bwa_index] Construct SA from BWT and Occ... 98.27 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index MSU7.fa
[main] Real time: 386.277 sec; CPU: 375.032 sec
[adiouf@node19 test4_1_bwaindex]$ ls
MSU7.fa  MSU7.fa.amb  MSU7.fa.ann  MSU7.fa.bwt  MSU7.fa.pac  MSU7.fa.sa
[adiouf@node19 test4_1_bwaindex]$