Page Index - ConesaLab/SQANTI3 GitHub Wiki

17 page(s) in this GitHub Wiki:

• Home
• Dependencies and installation
• Introduction to SQANTI3
• IsoAnnotLite
• Running SQANTI BUGSI
• Running SQANTI with the wrapper
• Running SQANTI3 filter
• Running SQANTI3 from the wrapper
• Running SQANTI3 Quality Control
• Running SQANTI3 rescue
• Running SQANTI‐reads
• SQANTI3 isoform classification: categories and subcategories
• SQANTI3 memory requeriments and paralellization
• Sqanti3 wrapper script
• Tutorial: running SQANTI3 on an example dataset
• Understanding the output of SQANTI3 QC
• Version history