5-ii. Lectures

CBW Informatics for RNA-seq analysis (June 16-17, 2016)

• Introduction to Cloud Computing (lecture/tutorial)
• Introduction to Genome Analysis Platforms](/Bioinformatics-Institute/transcriptomics_WBC/wiki/LectureFiles/cbw/2016/GenomeAnalysisPlatforms.pdf)
• Introduction to IGV Browser (tutorial)
• Module 1 - Introduction to RNA sequencing (lecture)
• Module 1 - Introduction to RNA sequencing (tutorial)
• Module 2 - RNA-seq alignment and visualization (lecture)
• Module 2 - RNA-seq alignment and visualization (tutorial)
• Module 3 - Expression and differential expression (lecture)
• Module 3 - Expression and differential expression (tutorial)
• Module 4 - Isoform discovery and alternative expression (lecture)
• Module 4 - Isoform discovery and alternative expression (tutorial)

###CSHL Advanced Sequencing Technologies and Applications (November 10-22, 2015)

Presentations:

• Introduction to cloud computing (lecture/tutorial)
• Introduction to IGV Browser (tutorial)
• Module 1 - Introduction to RNA sequencing (lecture)
• Module 1 - Introduction to RNA sequencing (tutorial)
• Module 2 - RNA-seq alignment and visualization (lecture)
• Module 2 - RNA-seq alignment and visualization (tutorial)
• Module 3 - Expression and differential expression (lecture)
• Module 3 - Expression and differential expression (tutorial)
• Module 4 - Isoform discovery and alternative expression (lecture)
• Module 4 - Isoform discovery and alternative expression (tutorial)

###CBW Informatics for RNA-seq analysis (June 8-9, 2015)

Presentations:

• Module 0 - Introduction to cloud computing (lecture/tutorial)
• Module 1 - Introduction to RNA sequencing (lecture)
• Module 1 - Introduction to RNA sequencing (tutorial)
• Module 2 - RNA-seq alignment and visualization (lecture)
• Module 2 - RNA-seq alignment and visualization (tutorial)
• Module 3 - Expression and differential expression (lecture)
• Module 3 - Expression and differential expression (tutorial)
• Module 4 - Isoform discovery and alternative expression (lecture)
• Module 4 - Isoform discovery and alternative expression (tutorial)

Lecture Videos:

• Module 0 - Introduction to Cloud Computing (lecture)
• Module 1 - Introduction to RNA sequencing and analysis (lecture)
• Module 2 - RNA-seq alignment and visualization (lecture)
• Module 3 - Expression and Differential Expression (lecture)
• Module 4 - Isoform Discovery and Alternate Expression (lecture)

###CSHL-CBW-NYGC High-throughput Biology: From Sequence to Networks (April 29-30, 2015)

Presentations:

• Module 1 - Introduction to RNA sequencing (lecture)
• Module 1 - Introduction to RNA sequencing (tutorial)
• Module 2 - RNA-seq alignment and visualization (lecture)
• Module 2 - RNA-seq alignment and visualization (tutorial)
• Module 3 - Expression and differential expression (lecture)
• Module 3 - Expression and differential expression (tutorial)
• Module 4 - Isoform discovery and alternative expression (lecture)
• Module 4 - Isoform discovery and alternative expression (tutorial)

###CSHL Advanced Sequencing Technologies and Applications (November 11-23, 2014)

Presentations:

• Module 1 - Introduction to cloud computing (lecture/tutorial)
• Module 2 - Introduction to RNA sequencing (lecture)
• Module 2 - Introduction to RNA sequencing (tutorial)
• Module 3 - RNA-seq alignment and visualization (lecture)
• Module 3 - RNA-seq alignment and visualization (tutorial)
• Module 4 - Expression and differential expression (lecture)
• Module 4 - Expression and differential expression (tutorial)
• Module 5 - Isoform discovery and alternative expression (lecture)
• Module 5 - Isoform discovery and alternative expression (tutorial)
• Introduction to Genome Analysis Platforms

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