Page Index - BigelowLab/charlie GitHub Wiki

40 page(s) in this GitHub Wiki:

• Home
• Topology
• Requesting an account
• Connecting to Charlie
• MacOS and Linux
• Windows
• Using Charlie
• Troubleshooting
• AAI with comparem
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• ANI Calculators
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• Common Errors
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• dada2
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• Metagenomic Read Recruitment to SAGs
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• modules
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• Other Bioinformatics Software
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• PBS on Charlie
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• PBS Tutorial BLAST
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• Prokka
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• qsub
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• Queues
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• Running a jupyter notebook from an interactive session
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• Running Anvi'o interactive on a browser through Bigelow server.
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• Running Anvi'o on C1
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• VirSorter
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