Page Index - ANTsX/ANTs GitHub Wiki

71 page(s) in this GitHub Wiki:

• Home
• Searching the wiki
• Installing ANTs
• Binaries
• Docker
• Compiling from source
• Using ANTs
• Anatomy of an antsRegistration call
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• ANTS and antsRegistration
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• ANTs version information
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• antsCorticalThickness and antsLongitudinalCorticalThickness output
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• antsRegistration metric sampling strategies
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• antsRegistration reproducibility issues
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• Applying transforms to point data
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• Command line parsing issues
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• Compiling ANTs on Linux and Mac OS
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• Compiling ANTs on Windows 10
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• Deprecated or legacy ANTs programs
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• Dimensionality or ImageDimension option in ANTs
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• Forward and inverse warps for warping images, pointsets and Jacobians
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• general questions about how to build a template
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• Generating a new release
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• How does ANTs handle qform and sform in NIFTI 1 images?
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• image vs point transformation, gradient step size and the jacobian
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• Importing diffusion tensor data from other software
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• Inputs do not occupy the same physical space
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• Install ANTs on Amazon
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• Installing ANTs release binaries
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• ITK affine transform conversion
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• My registration fails with an error
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• N4BiasFieldCorrection
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• Output images have incorrect headers or otherwise do not match the applied transform
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• Reconstruct DTI from DWI using mrtrix
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• simple case: T1 to MNI mapping for both structure and pre registered fMRI
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• SPM and ANTs compatibility
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• Tips for improving registration results
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• Using ITK‐SNAP with ANTs
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• Warp and reorient a diffusion tensor image
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• What is the effective scale of the SyN transformation?
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