Page Index - AADavin/Zombi GitHub Wiki

39 page(s) in this GitHub Wiki:

• Home
• Introduction
• The three main basic modes
• Birth death shift process (Ts)
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• Branch wise rates (Tb)
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• Family wise rates (Gm)
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• Full genome (Gf)
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• Full genome (Sf)
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• Generating Genomes
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• Generating Sequences
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• Generating Species Trees
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• Input tree (Ti)
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• Lineage profiling (Tp)
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• Massive Extinction event (Tm)
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• Parameters
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• Sampling species
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• Shifting substitution rate (Ss)
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• Tutorial #1: Generating data to test Molecular Clocks inference
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• Tutorial #2 Simulating realistic families
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• User defined rates (Gu)
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• User defined rates (Su)
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