Marker genes databases - zellerlab/stag GitHub Wiki
List of available marker gene stag databases for the 16S rRNA gene:
| Gene | Taxonomy used | Link |
|---|---|---|
| full-length 16S gene | GTDB 89 | link |
| full-length 16S gene | NCBI | link |
List of available marker gene stag databases for other marker genes:
| Gene | Taxonomy used | Link |
|---|---|---|
| COG0012 | NCBI | link |
| COG0016 | NCBI | link |
| COG0018 | NCBI | link |
| COG0172 | NCBI | link |
| COG0215 | NCBI | link |
| COG0495 | NCBI | link |
| COG0525 | NCBI | link |
| COG0533 | NCBI | link |
| COG0541 | NCBI | link |
| COG0552 | NCBI | link |