fingerprinting_procedure - yvancouver/Workflow GitHub Wiki

  1. MergeResults.py

     Checks is the path to vcf and definition files are correct 
 args.vcf args.def

  2. MergeResults then call SnpsHts

    2.0. What it does and in which order.

     First it imports the ReadDefinitionFile module, is this too early.

    2.1. SnpsHts functions , list ordered by first appearance ;-)

    2.1.1. GetVcfRecords

    2.1.2. GetSampleName

    2.1.3. GetSampleRunDate

    2.1.4. GetSampleRunDateAndSampleID

    2.1.5. GetSampleID_RunID_Index

    2.1.6. retrieveTaqManfile