Rewrite fingerprinting script - yvancouver/Workflow GitHub Wiki

again ....

now

python MergeResults.py -vcf snp.raw.snpFingerPrintingTest.vcf -defi snpQC.V1.tab

It should be

python MergeResults.py -ID 13000641231

Algorithm:

the first script MergeResults get an sampleID and the current directory.

Ying

1. runGroupPipeline.pl condor/Project/groupProfile.txt

   In the groupProfile.txt, every line contains sampleID condor/profileFile.txt

   in profileFile.txt

    runName=131009_7001448_0224_BC2G61ACXX
    project=Project_Diag-excap17-2013-09-18Redo
    SampleID=Sample_Diag-excap17-1000-KIT-AI50bv5
    captureKit=a5
   

2. first script calls variantCallingPipeline.pl

   This is completely outdated!

   Need to rewrite this article