Lab resources - yoshiji-lab/wiki GitHub Wiki
List of resources available in the lab:
High Performance Clusters (HPC)
- Alliance Canada (Compute Canada)
- Hydra
Cloud-based platform
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UK Biobank - Hosted on DNAnexus at https://ukbiobank.dnanexus.com/
How to learn: Quick start guide at https://dnanexus.gitbook.io/uk-biobank-rap/getting-started/quickstart
Recommended tutorial at https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/gwas-using-alzheimers-disease
Youtube tutorials by DNANexus at https://www.youtube.com/playlist?list=PLRkZ0Fz-n3Z7Jg0Vz4vudLYnBza4EUGLM -
All of Us - Hosted on All of Us Workbench at https://workbench.researchallofus.org/
Featured workspaces host multiple tutorial notebooks
Users Need to be very careful about the cost
Others
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CLSA - Hosted on CERC's Alliance Canada space
Data preview portal at https://datapreview.clsa-elcv.ca/datasets -
Curated GWAS summary statistics available
• GWAS pipeline for UKB, CLSA, All of Us available -
MR and colocalization pipeline available
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PI has access to MGBB through his affiliation with MGB-RI.