disease_stage - xiaofengleo/phenopackets-rdf-schema GitHub Wiki

Semantic model figure

---

ShEx

PREFIX : <http://purl.org/ejp-rd/phenopackets-rdf-schema/v010/shex/>
PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX sio: <http://semanticscience.org/resource/>

:diseaseShape IRI {
  a [obo:NCIT_C2991];
  sio:SIO_000008  @:diseaseStageShape
}
:diseaseStageShape IRI {
  a [sio:SIO_000614];
  sio:SIO_000332 [obo:NCIT_C28108];  
  sio:SIO_000300 /^http:\/\/purl.obolibrary.org\/obo\/NCIT_/ # Should be a subclass of NCIT:C28108 (Disease Stage Qualifier)
}

---

Example turtle

@prefix : <http://purl.org/ejp-rd/phenopackets-rdf-schema/v010/example-rdf/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix sio: <http://semanticscience.org/resource/> .

:disease1 a obo:NCIT_C2991;
 sio:SIO_000008  :diseaseStage1 .

:diseaseStage1 a sio:SIO_000614; # attribute
    sio:SIO_000332 obo:NCIT_C28108; # is about
    sio:SIO_000300 obo:NCIT_C140963 . # has value