WRITE - winkusch/Easy2 GitHub Wiki

Write data set. Output will be named /pathOut/[strWritePrefix]fileInShortName[strWriteSuffix].[txt|gz]

FUNCTION	PARAMETER	DEFAULT	DESCRIPTION
WRITE	--strMode	txt	plot mode (singleplot or subplot)
WRITE	--strPrefix		file prefix
WRITE	--strSuffix		file suffix
WRITE	--strSep	TAB	colum separator
WRITE	--strMissing	NA	missing character
WRITE	--strTabixParam		string with tabix parameters
WRITE	--blnHeader	TRUE
WRITE	--acolOut		array of written columns
WRITE	--blnChrWise	FALSE	logical whether data should be written by chromosome
WRITE	--colChr		column witj chromosome values (used for chunking)
WRITE	--blnWrite10rows	TRUE	logical whether 10 rows should also be written separately
WRITE	--blnWriteSnpList	FALSE
WRITE	--strSnpListSep	\n
WRITE	--colSnps	rsid
WRITE	--pathOut
WRITE	--blnChunkWise	FALSE	logical whether data should be written chunked
WRITE	--colChunk		column witj chunk values (used for chunking)

Example:
WRITE --strMode txt
--strPrefix CLEANED.
--strSuffix .TW
--strSep TAB
--strMissing .