SPLOT - winkusch/Easy2 GitHub Wiki
Create a scatterplot of columns in the GWA data-set.
| FUNCTION | PARAMETER | DEFAULT | DESCRIPTION |
|---|---|---|---|
| SPLOT | --rcdSPlotX | R-Code expression to define the x-values. | |
| SPLOT | --rcdSPlotY | R-Code expression to define the y-values. | |
| SPLOT | --strDefaultColour | black | default colour |
| SPLOT | --numDefaultSymbol | 20 | defulat symbol |
| SPLOT | --numDefaultCex | 1 | default cex |
| SPLOT | --numDefaultLwd | 1 | |
| SPLOT | --arcdColourCrit | array of R code expressions with criteria for varying colours | |
| SPLOT | --astrColour | array of colours according to criteria | |
| SPLOT | --astrColourLegend | ||
| SPLOT | --arcdSymbolCrit | array of R code expressions with criteria for varying symbols | |
| SPLOT | --anumSymbol | -1 | array of symbol values (R's pch parameter) |
| SPLOT | --astrSymbolLegend | ||
| SPLOT | --arcdCexCrit | array of cex values according to criteria | |
| SPLOT | --anumCex | -1 | array of symbol sizes (R's cex parameter) |
| SPLOT | --arcdLwdCrit | ||
| SPLOT | --anumLwd | -1 | array of line width |
| SPLOT | --strAxes | "X-/Y-axes alignment. Define plotting thresholds for x-axis [x0,x1] and y-axis [y0,y1]. Optional. Default: lim(NULL,NULL,NULL,NULL) Please use one of: equal/4quad/4quadequal/zeroequal/lim(x0,x1,y0,y1). (i) equal: Same x- and y-axis limits: x0=y0 and x1=y1; (ii) 4quad: All 4 quadrants will be drawn: x0=-x1 and y0=-y1; (iii) 4quadequal: All 4 quadrants will be drawn with the same x- and y-axis limits: x-axes limits == y-axes limits with lim=max(abs(x),abs(y)); (iv) zeroequal: x0=y0=0 and x1=y1=max(x,y); (v) lim(x0,x1,y0,y1): Define x- and y-axes limits (use NULL for default value) | |
| SPLOT | --strXlab | Plot x axis label | |
| SPLOT | --strYlab | Plot y axis label | |
| SPLOT | --strTitle | Plot title | |
| SPLOT | --blnLegend | FALSE | logical whether legend should be added |
| SPLOT | --arcdAdd2Plot | array of R code expressions that will be added to the plot (eg text(…)) | |
| SPLOT | --strMode | singleplot | plot mode (singleplot or subplot) |
| SPLOT | --strFormat | png | graphic file format |
| SPLOT | --rcdExclude | ||
| SPLOT | --numCexAxis | 1 | cex for axis |
| SPLOT | --numCexLab | 1 | cex for lables |
| SPLOT | --numWidth | 640, | Width of the plot in pixel. |
| SPLOT | --numHeight | 640, | Height of the plot in pixel. |
| SPLOT | --anumParMar | c(5.1,4.1,4.1,2.1) | array of four 'par' parameters |
| SPLOT | --anumParMgp | c(3,1,0) | array of three 'mgp' parameters |
| SPLOT | --strParBty | o | plot param 'bty' |
| SPLOT | --blnGrid | TRUE | |
| SPLOT | --strPlotName | sp | plot name (added to file name to indicate this plot) |
| SPLOT | --blnPlotCI | FALSE | logical whether confidence interval should be added |
| SPLOT | --rcdCIlengthX | ||
| SPLOT | --rcdCIlengthY | ||
| SPLOT | --strCIColour | grey | confidence interval colour |
| SPLOT | --blnAxesLines | TRUE | |
| SPLOT | --numParLas | 0 |
Example:
SPLOT --rcdSPlotX Freq
--rcdSPlotY -log10(Pvalue)
--strDefaultColour black
--numDefaultSymbol 20
--arcdColourCrit N<110000;N<80000
--astrColour purple;red
--arcdSymbolCrit (Freq<=0.05|Freq>=0.95);(Freq<=0.01|Freq>=0.99)
--anumSymbol 0;1
--strAxes lim(0,NULL,0,NULL)
--strTitle PoverFreq
--arcdAdd2Plot abline(v=0.05);abline(v=0.95);abline(h=-log10(5e-8))