PCA2STEP - winkusch/Easy2 GitHub Wiki

FUNCTION PARAMETER DEFAULT DESCRIPTION
PCA2STEP --rcdStep1Crit
PCA2STEP --colStep2Pval
PCA2STEP --numPcaThrs 0.995
PCA2STEP --filePcaBed
PCA2STEP --filePcaSample
PCA2STEP --numR2PosSize -9
PCA2STEP --numR2VarSize -9
PCA2STEP --colInChr Column name of the input chromosome.
PCA2STEP --colInMarker Column name of the input marker column.
PCA2STEP --colOutPval name of output P
PCA2STEP --blnParal FALSE logical whetehr process should be parallelized by chromosome
PCA2STEP --pathLibLoc
PCA2STEP --blnCrossChr FALSE
PCA2STEP --strTag PCA2STEP Tag for the function step that will be added to related variables in the REPORT and to related output to ensure unique and easily recognizable file names and REPORT variable names.