| LIFTOVER |
--colInChr |
|
Column name of the input chromosome. |
| LIFTOVER |
--colInPos |
|
Column name of the input position column. |
| LIFTOVER |
--fileLiftOver |
|
file path to liftover file |
| LIFTOVER |
--colLiftFromChr |
chr37 |
Chromsome column from which should be lifted |
| LIFTOVER |
--colLiftFromChr |
chr37 |
Chromsome column from which should be lifted |
| LIFTOVER |
--colLiftFromPos |
pos37 |
Position column from which should be lifted |
| LIFTOVER |
--colLiftToChr |
chr38 |
Chromsome column to which should be lifted |
| LIFTOVER |
--colLiftToPos |
pos38 |
Position column to which should be lifted |
| LIFTOVER |
--blnCheckLift |
TRUE |
logical whether lift should be checked based on 1000 variants |
| LIFTOVER |
--strBuildFrom |
37 |
genomic build from |
| LIFTOVER |
--strBuildTo |
38 |
genomic build to |
| LIFTOVER |
--strTag |
|
Tag for the function step that will be added to related variables in the REPORT and to related output to ensure unique and easily recognizable file names and REPORT variable names. |
| LIFTOVER |
--blnUseFastRead |
TRUE |
logical whether fread should be used |