EXTRACTSNPS - winkusch/Easy2 GitHub Wiki

Extract set of SNPs from the input data-set and write to separate file "*.extracted" in the output folder.

FUNCTION	PARAMETER	DEFAULT	DESCRIPTION
EXTRACTSNPS	--colInMarker		Column name of the input marker column.
EXTRACTSNPS	--fileRef		Path to the reference data including SNPs that will be extracted.
EXTRACTSNPS	--colRefMarker	SNP	SNP column name of the reference. Will be used for extaction.
EXTRACTSNPS	--strTag		Tag for the function step that will be added to related variables in the REPORT and to related output to ensure unique and easily recognizable file names and REPORT variable names.