CLEAN - winkusch/Easy2 GitHub Wiki

Exclude SNPs from input. Number of exclusion will be written to the REPORT variable defined in --strCleanName.

FUNCTION	PARAMETER	DEFAULT	DESCRIPTION
CLEAN	--rcdClean		R-Code expression to exclude SNPs. Needs to return a Boolean array. TRUE values will be removed from the input.
CLEAN	--strCleanName		Name of the REPORT variable to save the number of exclusions.
CLEAN	--blnWriteCleaned	FALSE	Boolean value to define whether SNPs that are removed from the input should be written to a separate file in the output folder. Optional. Default: 1 Please use: [0