ELBDM Spectral Interpolation - vivi235711/gamer GitHub Wiki

Spectral Interpolation in GAMER

This section provides an overview of the spectral interpolation method in GAMER implemented via the Gram-Fourier continuation algorithm in the Jupyter notebook GramFE.ipynb located in tool/table_maker/GramFE. This algorithm is essential for computing extension and interpolation tables.

Setup and Configuration

Compilation and Runtime Settings

  • Compile-Time Flag: Ensure GAMER is compiled with SUPPORT_SPECTRAL_INT (or configured with --spectral_interpolation).
  • Runtime Parameters: Set OPT__FLU_INT_SCHEME and OPT__REF_FLU_INT_SCHEME to 8 for enabling spectral interpolation. Set SPEC_INT_TABLE_PATH to the directory containing interpolation_tables and boundary2extension_tables. Enable SPEC_INT_XY_INSTEAD_DEPHA to interpolate x = density^0.5*cos( phase/SPEC_INT_WAVELENGTH_MAGNIFIER ), y = density^0.5*sin( phase/SPEC_INT_WAVELENGTH_MAGNIFIER ) instead of density and phase, which has the advantage of being well-defined across vortices. SPEC_INT_WAVELENGTH_MAGNIFIER is the stretching factor of wavelength; setting it to unity gives x=real part and y=imaginary part.

Obtaining Interpolation Tables

Downloading Interpolation Tables

  • Script: Use download_spectral_interpolation_tables.sh located in example/test_problem/ELBDM/LSS_Hybrid.

Generating Interpolation Tables

  • Script: Use compute_interpolation_tables.py located in tool/table_maker/GramFE.
  • Execution: Run mpirun -n 16 python3 compute_interpolation_tables.py for table generation.
  • Time Consumption: The script may take several hours to execute without additional output.

Advantages and Disadvantages of the Spectral Interpolation Algorithm

Advantages

  • Spectral Accuracy: Offers high-precision interpolation results.
  • Flexibility: Suitable for various interpolation needs within the GAMER framework.

Disadvantages

  • Non-conservative and Non-monotonic: Interpolation results may not always preserve these properties.
  • Computationally Intensive: Spectral interpolation is slower than polynomial interpolation with a local stencil (i.e. interpolation options 1=MinMod-3D, 2=MinMod-1D, 3=vanLeer, 4=CQuad, 5=Quad, 6=CQuar, 7=Quar).

Testing the Spectral Interpolation Algorithm

Different algorithms in GAMER introduce different discretisation errors:

  • numerical PDE solvers
  • interpolation (new patches during refinement and ghost boundaries for neighbouring patches on different AMR levels)
  • time interpolation for flexible time-steps (first-order)
  • restriction operation (first-order)
  • flux-fixup operation to ensure mass conservation

Minimising errors

To minimise these errors and measure the performance of different interpolation algorithms, you may consider the following settings

  • Use vortex pair test problems
  • Compile time parameters: ELBDM_SCHEME=ELBDM_WAVE, WAVE_SCHEME=WAVE_GRAMFE and GRAMFE_SCHEME == GRAMFE_MAMTUL
  • Runtime parameters: Turn OPT_FIXUP_FLUX, OPT_INIT_RESTRICT, OPT_FIXUP_RESTRICT, OPT_PHASE_INT off, set OPT__DT_LEVEL = 1

Known Issues

Negative Density in Spectral Interpolation

  • Problem Description: The spectral interpolation method may introduce negative density values. This issue arises because the interpolation is non-monotonic.
  • Consequences: Negative density can lead to NaN (Not a Number) values in both density and flux calculations within the fluid scheme. This problem has been observed to potentially cause MaxPot == 0.0 errors in certain simulations.
  • Current Investigation: The issue is under active investigation, with more details and ongoing discussions available on GitHub and Slack. Specific instances of this problem have been shared here.
  • Proposed Solution: A preliminary solution involves applying a density floor when preparing density ghost zones in Flu_Prepare(). This adjustment could prevent the generation of negative density values during spectral interpolation. Further details and implementation suggestions can be found in the related GitHub comment thread.

Recommendations for Users

  • Users encountering similar issues or observing unexpected results in density and flux calculations should use GAMER's other more reliable interpolation algorithms (i.e. 6=CQuar (conservative quartic interpolation)).

Implementation Details of the Spectral Interpolation Algorithm

Overview

  • The spectral interpolation method in GAMER is implemented through a Gram-Fourier continuation algorithm in the Jupyter notebook GramFE.ipynb, located in tool/table_maker/GramFE. The basic idea is to find a periodic extension of a given interpolant. This periodic function can then be interpolated using a DFT. This interpolation is not monotonic and not conservative, but highly accurate.

Algorithm References

Key Components and Libraries

  • Arbitrary Precision Arithmetic: Utilizes mpmath library.
  • Gram-Schmidt Orthogonalization: Implements this algorithm for basis computation.
  • SVD Algorithm: Used for high-precision continuations of Gram polynomials.
  • FFT Computations: Involves forward and backward FFTs in high precision.

Algorithm

The Python code generates two types of tables essential for the spectral interpolation algorithm, stored in interpolation_tables and boundary2extension_tables.

Interpolation for Small Input Sizes

  • Precomputed Operation: The entire interpolation process (GramFE extension * DFT * shift in k space * IDFT) is precomputed as a single matrix.
  • Storage: The resulting matrices are stored in double-precision binary files named N.bin, where N is the input interpolation size.
  • Efficiency: This approach is efficient for small values of N, requiring N^2 operations for each matrix multiplication at runtime.
  • Equivalent to Polynomial Interpolation: Notably, for m = N, this method is equivalent to polynomial interpolation of order N, as confirmed by numerical tests.

Interpolation for Large Input Sizes

  • Runtime Computation: For large inputs, the extension and DFTs are computed at runtime using the FFT algorithm.
  • Table Utilization: The tables %ld_%ld_%d_%d.bin are used, where nd, m, Gamma, g represent the table parameters. By applying these tables to the boundary data (size 2 * m), an extension of size nd is produced.
  • Adaptive Size Selection: The size nd is adaptively chosen during runtime to optimize the FFT algorithm's performance, favoring sizes with small prime factorizations.
  • Matrix and FFT Operations: The interpolation involves 2 * m * m matrix operations and additional O(N log N) operations for the FFT, managed by the FFTW library.

Accuracy Considerations

  • Determining Factors: The interpolation's accuracy heavily depends on the quality of the periodic extension.
  • Optimal Parameters: Parameters Gamma = 150, g = 63, nd = 32, and m = 8 strike a balance between stability and accuracy.
  • Artifacts and Behavior: Higher values of m can lead to interpolation artifacts, while lower values might reduce accuracy but result in smoother interpolation.

The following plots show a number of accuracy comparisons between quartic interpolation and spectral interpolation:

sine exp high-freq runge-function

The last function demonstrates that while the high-order boundary polynomials used in the boundary matching of the GramFE algorithm suffer from the Runge phenomenon, for larger N the numerical properties of the algorithm are determined by the plane wave basis and convergence sets in. Potentially, the large error of the GramFE method in this case can be remedied by switching to lower-order boundary polynomials for small N at the cost of sacrificing accuracy for more well-behaved functions.

Performance

The following plots show a performance comparison between quartic interpolation and spectral interpolation using matrix multiplication and FFT. It demonstrates that for $N < 30$, the matrix multiplication interpolation is faster.

timing

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