slideQuantify v2: 3 ‐ Tile Normalizing - swvanderlaan/slideToolKit GitHub Wiki

Description: This script designed to automate the normalization of images as part of a slideQuantify job session. Normalization ensures consistency and reliability in data interpretation by adjusting image properties to a standardized scale or format.

• Written by: Sander W. van der Laan; Tim Bezemer; Tim van de Kerkhof; Yipei Song; Tim S. Peters;
• E-mail: [email protected]
• Last update: 2023-09-01
• Version: 2.0.3

Usage:

./slideQuantify_v2_3_tile_normalizing.sh [tiles_dir]

Example Usage:

./slideQuantify_v2_3_tile_normalizing.sh /path/to/tiles_dir

Arguments:

• tiles_dir:
  • Description: The directory containing the tiles to be normalized.
  • Required: Yes