Image File Filter - stoeter/Fiji-Tools-for-HCS GitHub Wiki
- This set of macros help to process a set of images spread amount many images and subfolders
- all subfolders are searched for files
- image files can be filtered for their extension
- the list of image files can be filtered for certain text within the image file path
- the can macro display the filter lists so that the user can trouble shoot the filters
- Helpful for to open small subset of large image file list (e.g. from CellProfiler…)
- Helpful for to open subset of images distributed among many subfolders (e.g. BD Pathway)
- Images (currently only .tif)
- For 'ImageFileFilter' enter up to 3 filter texts to include or exclude these from image file list
- For 'ImageFileFilterRegEx' you need to know how to generate a regular expression for filter file list
- Help for RegEx
- These macros contain the Image File Filter Functions:
-
ImageFileFilter Open List of Images
- This macro opens .tif from all subfolders after filtering file list for up to 3 user specified text
-
ImageFileFilterRegEx Open List of Images
- This macro opens .tif from all subfolders after filtering file list using a user specified regular expression
-
ImageFileFilter Manual Counter
- This macro opens .tif from using 3 ImageFileFilter and allows manual counting of objects image by image
- quickly access and open specified images from larger set to image files
- the macros record in a log window which images were opened and where results were store
- this serves as a documentation of that the macro did
- combine 'ImageFileFilter' or 'ImageFileFilterRegEx' with small marco command to extend functionality of this set of macros
- copy/paste section "Functions" from macros and re-used that for your own macro to process automatically many images