Adding datasets - stjude/proteinpaint GitHub Wiki
Adding Datasets
Use this table as a guide for how to launch each dataset within runproteinpaint()
DATASET | GENOME(S) | CODE |
---|---|---|
CIViC | hg19 | "dataset": "CIViC" |
Clinvar | hg19 | "dataset": "clinvar" |
COSMIC | hg19, hg38 | "tracks": [{ "type": "mds3", "dslabel": "COSMIC" }] |
Pediatric | hg19, hg38 | "dataset": "Pediatric" |
Pediatric2 | hg19, hg38 | "datasetqueries": [{ "dataset": "Pediatric2", "querykey": "svcnv"}] |