How to Log-in to Staton Server

• login, type password
  ssh [email protected]
• create conda environment

conda activate qiime2-2020.2

• check that it works
  qiime --help

Navigating Staton folders

• go up two folders
  cd ../../staton
ls
• you will see all the folders within
  cd projects
• use autofill cd Bi
• hit tab and should autofill t capital c and type lowercase r so it should autofill folder name
• hit tab again and it'll fill it out again to CrackNAg
• or directly type/paste:
  cd BiGG_CrackNAg/
cd raw_data
ls
cd .. - command to go up one folder

Copying Folder

cp filename ../foldername

Example:

cp TN14_S30_L001_R2_001.fastq.gz ../MS_practice