Pub a thon 2017 - sr320/LabDocs GitHub Wiki

This page list all the major products in Pub-a-thon 2017.

  1. Aquaculture and Epigenetics
    Repo-URL:
    draft: on GoogleDocs
    status
    Journal 1: NOAA Technical Note
    Journal 2: PeerJ
    Response to Reviews: on GoogleDocs
    PeerJ Revisions: on Google Docs
  1. Shellfish Functional Genomics
    Repo-URL: https://github.com/sr320/fun-gen
    draft: on GoogleDocs
    status
    Journal: JSR
  1. Differential response to stress in Ostrea lurida (Carpenter 1864) as indicated by GENE EXPRESSION
    repo-URL: https://github.com/RobertsLab/paper-Olurida-gene
    draft: (see repo)
    preprint: https://peerj.com/preprints/1595/
    status
    Review Response: GoogleDocs
  1. Oyster Reproduction / Genetics and Epigenetics
    repo-URL:
    draft: googledoc
    status
    Submission - Book Chapter
  1. Puget Sound Oly Larval Performance
    repo-URL: https://github.com/ksil91/PS-Oly-Larvae-Growth
    draft: google-doc, Scientific Report version google-doc
    status - Paperpile
    Journal: Scientific Reports
  1. Juvenile Geoduck OA Exposure: Growth and Methylation (Hollie et al.)
    repo-URL: https://github.com/hputnam/project_juvenile_geoduck_OA
    draft: authorea
    status
  1. Geoduck Transcriptome
    repo-URL: https://osf.io/3xf6m/
    status
  1. Oly paper Megan (Megan)
    repo-URL: https://github.com/MeganHintz/Paper---Oly-fingerprinting
    draft: google-doc
    status - Paperpile
  1. Climate adaptability in Ostrea lurida (Laura)
    Repo-URL: https://github.com/laurahspencer/O.lurida_Temp-OA_Gonad
    draft: on GoogleDocs
    status
  1. C.gigas methylation analysis (Yaamini)
    repo-URL: https://github.com/RobertsLab/paper-gigas-metaanalysis
    draft: google-doc
    status
  1. Oyster Hatchery 2015 Proteomics
    repo-URL: https://github.com/RobertsLab/project-pacific.oyster-larvae
    draft: 2015 Google Doc
    status
  1. Geoduck OA Larval Proteomics Jose
    repo-URL:
    draft: GoogleDoc
    status
  1. Assessment of Toxicant Impact to Coho Salmon using a Novel Toxicogenetic Biomarker Assay
    Repo-URL:
    draft: on GoogleDocs
    status
  1. Oyster Hatchery 2016 Proteomics
    repo-URL: https://github.com/RobertsLab/project-pacific.oyster-larvae
    draft: 2016 Google Doc
    status
  1. Geoduck / Oyster DNR proteomics (Laura + Yaamini)
    repo-URL: https://github.com/RobertsLab/Paper-DNR-Proteomics
    draft: google-doc
    status - Paperpile
  1. Flounder Gene Expression
    Repo-URL:
    draft: on GoogleDocs
    status
  1. Oly Pop Gen (2bRAD - BS)
    repo-URL:
    draft:
    status
  1. A non-lethal, field-based anesthesia protocol for sampling the mantle cavity of Olympia oysters (Megan)
    repo-URL:
    draft:google doc
    preprint: https://www.dropbox.com/s/dfwtw8e2s2ix6zf/AnesthesiaPaper_v87.docx?dl=0
    status
    Journal: Journal of Shellfish Research
  1. What goes up must come down: Diel vertical migration in the deepwater sablefish (Anoplopoma fimbria) revealed by satellite popup tags
    status
    Journal: Fisheries Oceanography
  1. Coral Epi RAD (Jay)
    repo-URL: https://github.com/jldimond/Branching-Porites
    preprint: http://biorxiv.org/content/early/2017/03/22/119156
    status
    Journal: Molecular Ecology
  1. Integrating discovery-driven proteomics and selected reaction monitoring to develop a non-invasive assay for geoduck reproductive maturation (Emma)
    repo-URL:https://github.com/sr320/supp-geoduck-proteomics
    draft:
    preprint: https://doi.org/10.1101/094615
    status
    Journal: Journal of Proteome Research
  1. Evidence of Ostrea lurida (Carpenter 1864) population structure in Puget Sound, WA
    repo-URL: https://github.com/RobertsLab/OluridaSurvey2014
    draft:
    preprint: https://peerj.com/preprints/704/
    status
    Journal: Marine Ecology
  1. Oly GBS (Sam)
    data records repo-URL: https://osf.io/j8rc2/
    draft repo-URL: https://github.com/kubu4/paper_oly_gbs
    draft: https://www.authorea.com/users/4974/articles/149442
    preprint (Overleaf): https://www.overleaf.com/read/mqbbvmwxhncg
    preprint (PDF): https://osf.io/cdj7m/
    status
    Status Details
    Review Response: on GoogleDocs
    Journal: Scientific Data