HuBMAP - sporedata/researchdesigneR GitHub Wiki

General description

The Human BioMolecular Atlas Program (HuBMAP) is an open, global atlas of the human body at the cellular level. The HuBMAP Data Portal allows access to both restricted and unrestricted access data, making it the central resource for the discovery, download, and visualization of single-cell tissue data generated by the consortium. A standardized data curation and processing workflow ensures that only high quality is released.

Related publications

• An atlas of healthy and injured cell states and niches in the human kidney
• The expanding vistas of spatial transcriptomics
• Dictionary learning for integrative, multimodal and scalable single-cell analysis
• Spatial epigenome–transcriptome co-profiling of mammalian tissues
• Ferroptosis turns 10: Emerging mechanisms, physiological functions, and therapeutic applications
• Complete genomic and epigenetic maps of human centromeres
• Integrated analysis of multimodal single-cell data
• Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices
• Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma
• Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

Data access

More information about HuBMAP can be found at https://portal.hubmapconsortium.org/

To access HuBMAP data, visit https://portal.hubmapconsortium.org/search?entity_type[0]=Dataset