study show - spiralgenetics/biograph GitHub Wiki

study show

Use biograph vdb study show to show details about a study, including the creation time, genetic reference, checkpoints, and sample data.

$ biograph vdb study show my_study
study_name: my_study
created_on: 2021-05-13 14:50:19
     build: GRCh38
   refname: grch38

checkpoints:
   1: added HG002: 2e7a0129-13a5-44b6-8594-2fc2e6c80e6c; HG003: a98626d6-758b-468d-add9-fbfbac47d207; HG004: 9a174215-8fc5-4c6f-bc4b-134654f65b99
   2: include filter == PASS

sample_name      variant_count
HG002            4450296
HG003            4271571
HG004            4542702

Getting more help

$ biograph vdb study show --help
usage: biograph vdb study show [-h] study_name

Show details about a study

positional arguments:
  study_name  Name of the study

optional arguments:
  -h, --help  show this help message and exit