Post processing - single-cell-genetics/limix_qtl GitHub Wiki

Posprocessing - genome level summary

Name: _results_genome.h5 +-feature_id

| +--metadata || +-- gene_id [|S8, (100,), None] || +-- gene_name [|S8, (100,), None] ||+-- strand [|S8, (100,), None] || +-- chromosome [|S8, (100,), None] || +-- start [|S8, (100,), None] || +-- end [|S8, (100,), None]

| +--data | +--snp_id [|S8, (100,), None] | +--number_samples [int64, (100,), None] | +--beta [float64, (100,), None] | +--pv [float64, (100,), None]

|+--summary_data || +--min_pv [, (1,), None] || +--min_pv_local_adjusted [, (1,), None] || +--min_pv_pos [, (1,), None] || +--min_pv_tss_distance [, (1,), None]

_summarized_results_genome.h5

  +-gene_id

| +--metadata || +-- gene_id [|S8, (100,), None] || +-- gene_name [|S8, (100,), None] || +-- strand [|S8, (100,), None] || +-- chromosome [|S8, (100,), None] || +-- start [|S8, (100,), None] || +-- end [|S8, (100,), None]

| +--data | +--snp_id [|S8, (100,), None] | +--number_samples [int64, (100,), None] | +--beta [float64, (100, #F), None] | +--pv [float64, (100,#F), None]

|+--summary_data || +--min_pv [, (1,), None] || +--min_pv_local_adjusted [, (1,), None] || +--min_pv_pos [, (1,), None] || +--min_pv_feature_id [, (1,), None] || +--min_pv_snp_id [, (1,), None] || +--min_pv_tss_distance [, (1,), None]