| 21st Jan |
Reading Petter Brodin Paper and understanding the techniques used |
6hrs |
Done |
| 22nd Jan |
Reading Petter Brodin Paper, attending the group Meeting |
8hrs |
Done |
| 23rd Jan |
Attended mandatory meeting at 9 am, clarified few questions and left early to Uppsala for another meeting there, writing steps of Petter Brodin Paper |
5 hrs |
Done |
| 24th Jan |
Work from home, tried setting up the environment by downloading the libraries, writing the steps for starting the analysis |
3hrs |
Done |
| 27th Jan |
Collected count sample data and started working on loading all the 38 samples into R studio |
5hrs |
Done |
| 28th Jan |
Worked with uploading the samples, made the gene-sample table |
5hrs |
Done |
| 29th Jan |
Downloaded the package biomaRt to find only protein-coding gene from ensembl, but it failed multiple times due to server issue |
5hrs |
Done |
| 30th Jan |
Tried to re-run the biomaRt package, tried the conventional method of comparing the ensembl to genes list, meeting with Anoop to show the progress of work |
6hrs |
Done |
| 31st Jan |
Tried extracting the protein-coding list from the output data of biomaRt and clustering all the genes |
5hrs |
Done |
| 3rd Feb |
Took a break, had to go for a meeting at Uppsala University, but made small modifications to the PCA cluster |
3hrs |
|
| 4th Feb |
Working with PCA cluster of 10% varying highly expressed genes |
4hrs |
Done |
| 5th Feb |
Checking and verifying why clustering is not as expected, making changes code and running, writing basic on GitHub wiki and report writing |
5hrs |
Done |
| 6th Feb |
Making changes, preparing for update meeting and Report Writing |
4hrs |
Done |
| 7th Feb |
Preparing for presentation, updating from hg38 v99 to v96 and running it, same output and presenting the data in the meeting |
5hrs |
Done |