Virus Network Literature - serratus-bio/open-virome GitHub Wiki

"Larger was partitioned into modules 2 through 12 using the constant Potts model (57) as implemented by the leidenalg Python package."

"In total, the VIRION database is the largest open-source, open-access database of its kind, with roughly half a million unique records that include 9,521 resolved virus “species” (of which 1,661 are ICTV ratified), 3,692 resolved vertebrate host species, and 23,147 unique interactions between taxonomically valid organisms."

"Through several use cases, we demonstrate its utility in enabling hypothesis generation regarding the relationships between microbes and diseases, generating sample-specific graph embeddings, and providing robust pathogen prediction."