Virome Module - serratus-bio/open-virome GitHub Wiki

The Virome Module displays data related to viruses from palmdb.

Virome network

The Virome network displays the virus-run bipartite network derived from the runs matching the user's query. See Virome wiki.

The Cytoscape plot can be rendered using sOTUs, Virus Family, or Top Genbank Hit as the virus nodes.

Clicking a virus displays the top GenBank match associated with the detected palmprint and a link to run a BLAST search using the palmprint on the entire SRA.

Clicking a run node displays the run label, BioProject and Biosample.

Metadata-wide Association Study (MWAS)

MWAS is a tool that uses statistical analysis tests to find correlations between metadata sourced from NCBI BioSample database and viral reads sourced from palmdb.

The MWAS displays precomputed results using virus families as the background set and existing metadata values as the target set. The rows surfaced in the MWAS plot are any BioProjects that match the user's query. Clicking a point on the scatter plot shows the details of the MWAS result. A search bar allows filtering MWAS results using any text that is included in the MWAS result (attribute name, value, virus family, virus species, bioproject, biosample).